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  • Sainsbury Wellcome Centre
  • London

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@SainsburyWellcomeCentre @brainglobe @neuroinformatics-unit @photon-mosaic

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lauraporta/README.md

Hi, I'm Laura 👋

Senior Research Software Engineer at the Sainsbury Wellcome Centre (UCL), in the Neuroinformatics Unit and the Margrie Lab.

What I'm building

  • photon-mosaic — APIs and automated, reproducible pipelines for multiphoton calcium-imaging data (Snakemake + Slurm); an inter-institute open-source effort with the Allen Institute for Neural Dynamics and the International Brain Laboratory
  • derotation — reconstructs clean movies from line-scanned recordings of rotating brains, unblocking analysis that wasn't otherwise possible
  • translocator-models — a Python toolkit for modelling population fold-changes in response to sensory stimuli
  • neurodecoders — a PyTorch toolkit for reconstructing visual stimuli from brain activity, with MLflow experiment tracking

Beyond the day job 🌱

I'm also a creative coder and live-coder: a Hydra-for-Jupyter integration for generative visuals from notebooks, a creative-coding catalogue (Hydra, p5.js, Python…), and the occasional VJ set at Algoraves — sometimes driven by live neural (EEG) data.

Pinned Loading

  1. neuroinformatics-unit/derotation neuroinformatics-unit/derotation Public

    Derotate images acquired via multiphoton calcium imaging

    Python 17 4

  2. neuroinformatics-unit/translocator-models neuroinformatics-unit/translocator-models Public archive

    Evaluate the model for the translocator project

    Python 3

  3. photon-mosaic/photon-mosaic-pipeline photon-mosaic/photon-mosaic-pipeline Public

    Automated and reproducible analysis of multiphoton imaging datasets

    Python 20 4

  4. photon-mosaic/photon-mosaic photon-mosaic/photon-mosaic Public

    Python API for functional imaging in neuroscience

    Python 11 1