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Deadlock on 1.3.3

Status: Open.

#695 In OpenGene/fastp;

· jchorl opened on May 15, 2026

Infinite hang/deadlock when processing desynchronized PE reads ("different read numbers of the pack")

Status: Open.

#694 In OpenGene/fastp;

· vaishnavigawde-01 opened on May 12, 2026

Lowercase adapter auto-detected

Status: Open.

#693 In OpenGene/fastp;

· schorlton-bugseq opened on May 6, 2026

Feature request for base correction for PE data

Status: Open.

#692 In OpenGene/fastp;

· asilvestris84 opened on May 4, 2026

Feature request: tile-level QC partitioning via regex on read name

Status: Open.

#691 In OpenGene/fastp;

· jdidion opened on May 4, 2026

Feature request: standalone adapter-detection subcommand

Status: Open.

#690 In OpenGene/fastp;

· jdidion opened on May 4, 2026

Feature request: library-type presets for common sequencing workflows

Status: Open.

#689 In OpenGene/fastp;

· jdidion opened on May 4, 2026

Feature request: empirical sequencing-error-rate estimation

Status: Open.

#688 In OpenGene/fastp;

· jdidion opened on May 4, 2026

fastp v1.3.2: -w does not bound total CPU usage (regression from older versions)

Status: Open.

#685 In OpenGene/fastp;

· RAHenriksen opened on Apr 20, 2026

Automatic adapter detection detects ~1000x fewer adapter trimmed reads compared to specifying TruSeq adapters manually

Status: Open.

#673 In OpenGene/fastp;

· pmoris opened on Mar 23, 2026

adding -overlap_len_require changes the PE adaptor trimming outcome

Status: Open.

#664 In OpenGene/fastp;

· reykeryao opened on Mar 9, 2026

For batch processing of paired ends, fastp is unable to recognise samples as paired if -1 and -2 arguments are _1.fastq.gz and _2.fastq.gz instead of _1.fastq and _2.fastq

Status: Open.

#661 In OpenGene/fastp;

· jonng1000 opened on Feb 10, 2026