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671 firstreprand in experimental design was incorrectly specified#674

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671-firstreprand-in-experimental-design-was-incorrectly-specified
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671 firstreprand in experimental design was incorrectly specified#674
guydavenport wants to merge 75 commits into
brapi-V2.1from
671-firstreprand-in-experimental-design-was-incorrectly-specified

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BrapiCoordinatorSelby and others added 30 commits September 1, 2025 13:39
* Initial proposal for extended experimental design

* fixed examples

* Apply automatic changes

* deprecated PUI

* Apply automatic changes

* update ExperimentalDesign JSON schema

* reverted factorName and modalityName.

* Apply automatic changes

* nullable field

* fixed JSON

* Apply automatic changes

* updated generate to create separate files

---------

Co-authored-by: Guy Davenport <guy.davenport@partners.basf.com>
Co-authored-by: Guy Davenport <guy@daveneti.com>
Co-authored-by: daveneti <376097+daveneti@users.noreply.github.com>
Co-authored-by: guydavenport <6523224+guydavenport@users.noreply.github.com>
…ble tag and remove the out directory (#650)

* update CI

* deleted out directory

* fixed nullable

* removed nullable for refs

* removed nullable in wrong place

* fixed indentation

* improved logging

* take into account nullable

* take into account array in ref

* correct as per https://stackoverflow.com/questions/40920441/how-to-specify-a-property-can-be-null-or-a-reference-with-swagger

* Apply automatic changes

* fixed ObservationTreatment link

* Apply automatic changes

---------

Co-authored-by: Guy Davenport <guy.davenport@partners.basf.com>
Co-authored-by: Guy Davenport <daveneti@gmail.com>
Co-authored-by: guydavenport <6523224+guydavenport@users.noreply.github.com>
Co-authored-by: Guy Davenport <guy.davenport@partners.basf.com>
…transactions. This avoids changing the model in this version.
- Changed -c parameter from 'Specification/Components' to 'Specification/OpenAPI-Components'
- This ensures consistency with generateOpenAPI and generateOpenAPIJSON tasks
- Fixes discrepancy between local and CI-generated comparison files
Guy Davenport and others added 26 commits May 15, 2026 18:22
…hema-tools' of github_guy:plantbreeding/BrAPI into 662-update-the-json-schema-due-to-changes-in-the-schema-tools
…ges-in-the-schema-tools

# Conflicts:
#	Specification/BrAPI-Schema/BrAPI-Phenotyping/ObservationUnit.json
#	Specification/Generated/brapi_generated.ttl
…o-changes-in-the-schema-tools' into brapi-V2.2
@guydavenport

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Merge to wrong branch

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firstRepRand in Experimental Design was incorrectly specified

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